Missing Data - CRAN Task View

accelmissing

Missing Value Imputation for Accelerometer Data

Version 1.4

deductive

Data Correction and Imputation Using Deductive Methods

Version 1.0.0

ade4

Analysis of Ecological Data: Exploratory and Euclidean Methods in Envi...

Version 1.7-22

AeRobiology

A Computational Tool for Aerobiological Data

Version 2.0.1

aLFQ

Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteo...

Version 1.3.6

alleHap

Allele Imputation and Haplotype Reconstruction from Pedigree Databases

Version 0.9.9

Amelia

A Program for Missing Data

Version 1.8.2

cmfrec

Collective Matrix Factorization for Recommender Systems

Version 3.5.1-3

bayesCT

Simulation and Analysis of Adaptive Bayesian Clinical Trials

Version 0.99.3

bcROCsurface

Bias-Corrected Methods for Estimating the ROC Surface of Continuous Di...

Version 1.0-6

biclustermd

Biclustering with Missing Data

Version 0.2.3

BIFIEsurvey

Tools for Survey Statistics in Educational Assessment

Version 3.6-6

bild

A Package for BInary Longitudinal Data

Version 1.2-1

BLOQ

Impute and Analyze Data with BLOQ Observations

Version 0.1-1

bmem

Mediation Analysis with Missing Data Using Bootstrap

Version 2.1

bmemLavaan

Mediation Analysis with Missing Data and Non-Normal Data

Version 0.5

bnstruct

Bayesian Network Structure Learning from Data with Missing Values

Version 1.0.15

bootImpute

Bootstrap Inference for Multiple Imputation

Version 1.2.1

brlrmr

Bias Reduction with Missing Binary Response

Version 0.1.7

brxx

Bayesian Test Reliability Estimation

Version 0.1.2

FastImputation

Learn from Training Data then Quickly Fill in Missing Data

Version 2.2.1

CALIBERrfimpute

Multiple Imputation Using MICE and Random Forest

Version 1.0-7

cat

Analysis and Imputation of Categorical-Variable Datasets with Missing ...

Version 0.0-9

eRm

Extended Rasch Modeling

Version 1.0-6

cglasso

Conditional Graphical LASSO for Gaussian Graphical Models with Censore...

Version 2.0.7

CGManalyzer

Continuous Glucose Monitoring Data Analyzer

Version 1.3.1

hapassoc

Inference of Trait Associations with SNP Haplotypes and Other Attribut...

Version 1.2-9

simsem

SIMulated Structural Equation Modeling

Version 0.5-16

climatol

Climate Tools (Series Homogenization and Derived Products)

Version 4.1.0

ClusPred

Simultaneous Semi-Parametric Estimation of Clustering and Regression

Version 1.1.0

ClustImpute

K-Means Clustering with Build-in Missing Data Imputation

Version 0.2.4

iWeigReg

Improved Methods for Causal Inference and Missing Data Problems

Version 1.1

coefficientalpha

Robust Coefficient Alpha and Omega with Missing and Non-Normal Data

Version 0.7.2

OTrecod

Data Fusion using Optimal Transportation Theory

Version 0.1.2

cold

Count Longitudinal Data

Version 2.0-3

DTSg

A Class for Working with Time Series Data Based on 'data.table' and 'R...

Version 1.1.3

convergEU

Monitoring Convergence of EU Countries

Version 0.7.3.2

creditmodel

Toolkit for Credit Modeling, Analysis and Visualization

Version 1.3.1

DTWBI

Imputation of Time Series Based on Dynamic Time Warping

Version 1.1

CRTgeeDR

Doubly Robust Inverse Probability Weighted Augmented GEE Estimator

Version 2.0.1

DTWUMI

Imputation of Multivariate Time Series Based on Dynamic Time Warping

Version 1.0

daqapo

Data Quality Assessment for Process-Oriented Data

Version 0.3.2

denoiseR

Regularized Low Rank Matrix Estimation

Version 1.0.2

ipw

Estimate Inverse Probability Weights

Version 1.2.1

DrImpute

Imputing Dropout Events in Single-Cell RNA-Sequencing Data

Version 1.0

ie2misc

Irucka Embry's Miscellaneous USGS Functions

Version 0.9.1

eatRep

Educational Assessment Tools for Replication Methods

Version 0.14.7

ECLRMC

Ensemble Correlation-Based Low-Rank Matrix Completion

Version 1.0

eicm

Explicit Interaction Community Models

Version 1.0.3

eigenmodel

Semiparametric Factor and Regression Models for Symmetric Relational D...

Version 1.11

experiment

R Package for Designing and Analyzing Randomized Experiments

Version 1.2.1

fastLink

Fast Probabilistic Record Linkage with Missing Data

Version 0.6.1

FHDI

Fractional Hot Deck and Fully Efficient Fractional Imputation

Version 1.4.1

FILEST

Fine-Level Structure Simulator

Version 1.1.2

filling

Matrix Completion, Imputation, and Inpainting Methods

Version 0.2.3

fillr

Fill Missing Values in Vectors

Version 1.0.0

CensMFM

Finite Mixture of Multivariate Censored/Missing Data

Version 3.1

flare

Family of Lasso Regression

Version 1.7.0.1

gapfill

Fill Missing Values in Satellite Data

Version 0.9.6-1

gbmt

Group-Based Multivariate Trajectory Modeling

Version 0.1.3

MMDai

Multivariate Multinomial Distribution Approximation and Imputation for...

Version 2.0.0

gerbil

Generalized Efficient Regression-Based Imputation with Latent Processe...

Version 0.1.9

ltm

Latent Trait Models under IRT

Version 1.2-0

grf

Generalized Random Forests

Version 2.3.2

GSE

Robust Estimation in the Presence of Cellwise and Casewise Contaminati...

Version 4.2-1

gsynth

Generalized Synthetic Control Method

Version 1.2.1

HardyWeinberg

Statistical Tests and Graphics for Hardy-Weinberg Equilibrium

Version 1.7.8

misaem

Linear Regression and Logistic Regression with Missing Covariates

Version 1.0.1

hot.deck

Multiple Hot Deck Imputation

Version 1.2

iCellR

Analyzing High-Throughput Single Cell Sequencing Data

Version 1.6.7

icenReg

Regression Models for Interval Censored Data

Version 2.0.16

IPWboxplot

Adapted Boxplot to Missing Observations

Version 0.1.2

imp4p

Imputation for Proteomics

Version 1.2

impimp

Imprecise Imputation for Statistical Matching

Version 0.3.1

imputeLCMD

A Collection of Methods for Left-Censored Missing Data Imputation

Version 2.1

imputeMulti

Imputation Methods for Multivariate Multinomial Data

Version 0.8.4

imputeR

A General Multivariate Imputation Framework

Version 2.2

imputeTestbench

Test Bench for the Comparison of Imputation Methods

Version 3.0.3

imputeTS

Time Series Missing Value Imputation

Version 3.3

IncomPair

Comparison of Means for the Incomplete Paired Data

Version 0.1.0

irrNA

Coefficients of Interrater Reliability – Generalized for Randomly Inco...

Version 0.2.3

Iscores

Proper Scoring Rules for Missing Value Imputation

Version 1.1.0

isni

Index of Local Sensitivity to Nonignorability

Version 1.3

isotree

Isolation-Based Outlier Detection

Version 0.6.1-1

JointAI

Joint Analysis and Imputation of Incomplete Data

Version 1.0.6

jomo

Multilevel Joint Modelling Multiple Imputation

Version 2.7-6

lilikoi

Metabolomics Personalized Pathway Analysis Tool

Version 2.1.1

LNIRT

LogNormal Response Time Item Response Theory Models

Version 0.5.1

lodi

Limit of Detection Imputation for Single-Pollutant Models

Version 0.9.2

lori

Imputation of High-Dimensional Count Data using Side Information

Version 2.2.2

LOST

Missing Morphometric Data Simulation and Estimation

Version 2.1.1

mde

Missing Data Explorer

Version 0.3.2

mdgc

Missing Data Imputation Using Gaussian Copulas

Version 0.1.7

metasens

Statistical Methods for Sensitivity Analysis in Meta-Analysis

Version 1.5-2

metavcov

Computing Variances and Covariances, Visualization and Missing Data So...

Version 2.1.5

MGMM

Missingness Aware Gaussian Mixture Models

Version 1.0.1.1

mi

Missing Data Imputation and Model Checking

Version 1.1

miceadds

Some Additional Multiple Imputation Functions, Especially for 'mice'

Version 3.17-44

micemd

Multiple Imputation by Chained Equations with Multilevel Data

Version 1.10.0

miceRanger

Multiple Imputation by Chained Equations with Random Forests

Version 1.5.0

migui

Graphical User Interface to the 'mi' Package

Version 1.3

MIIPW

IPW and Mean Score Methods for Time-Course Missing Data

Version 0.1.1

mimi

Main Effects and Interactions in Mixed and Incomplete Data

Version 0.2.0

missCompare

Intuitive Missing Data Imputation Framework

Version 1.0.3

missForest

Nonparametric Missing Value Imputation using Random Forest

Version 1.5

missingHE

Missing Outcome Data in Health Economic Evaluation

Version 1.5.0

missMDA

Handling Missing Values with Multivariate Data Analysis

Version 1.19

missMethods

Methods for Missing Data

Version 0.4.0

missSBM

Handling Missing Data in Stochastic Block Models

Version 1.0.4

missSOM

Self-Organizing Maps with Built-in Missing Data Imputation

Version 1.0.1

mitml

Tools for Multiple Imputation in Multilevel Modeling

Version 0.4-5

mitools

Tools for Multiple Imputation of Missing Data

Version 2.4

miWQS

Multiple Imputation Using Weighted Quantile Sum Regression

Version 0.4.4

mixture

Mixture Models for Clustering and Classification

Version 2.1.1

MKinfer

Inferential Statistics

Version 1.2

MLCIRTwithin

Latent Class Item Response Theory (LC-IRT) Models under Within-Item Mu...

Version 2.1.1

mlmi

Maximum Likelihood Multiple Imputation

Version 1.1.2

modi

Multivariate Outlier Detection and Imputation for Incomplete Survey Da...

Version 0.1.2

momentuHMM

Maximum Likelihood Analysis of Animal Movement Behavior Using Multivar...

Version 1.5.5

mreg

Fits Regression Models When the Outcome is Partially Missing

Version 1.2.1

naivebayes

High Performance Implementation of the Naive Bayes Algorithm

Version 1.0.0

pseval

Methods for Evaluating Principal Surrogates of Treatment Response

Version 1.3.1

niaidMI

Markov Model Multiple Imputation for NIAID OS

Version 1.1.0

nipals

Principal Components Analysis using NIPALS or Weighted EMPCA, with Gra...

Version 0.8

NIRStat

Novel Statistical Methods for Studying Near-Infrared Spectroscopy (NIR...

Version 1.1

NMADiagT

Network Meta-Analysis of Multiple Diagnostic Tests

Version 0.1.2

norm

Analysis of Multivariate Normal Datasets with Missing Values

Version 1.0-11.1

NPBayesImputeCat

Non-Parametric Bayesian Multiple Imputation for Categorical Data

Version 0.5

pan

Multiple Imputation for Multivariate Panel or Clustered Data

Version 1.9

pCODE

Estimation of an Ordinary Differential Equation Model by Parameter Cas...

Version 0.9.4

PKLMtest

Classification Based MCAR Test

Version 1.0.1

robber

Using Block Model to Estimate the Robustness of Ecological Network

Version 0.2.4

phylin

Spatial Interpolation of Genetic Data

Version 2.0.2

plsRglm

Partial Least Squares Regression for Generalized Linear Models

Version 1.5.1

ppmSuite

A Collection of Models that Employ Product Partition Distributions as ...

Version 0.3.4

prefmod

Utilities to Fit Paired Comparison Models for Preferences

Version 0.8-36

PReMiuM

Dirichlet Process Bayesian Clustering, Profile Regression

Version 3.2.13

primePCA

Projected Refinement for Imputation of Missing Entries in PCA

Version 1.2

wrangle

A Systematic Data Wrangling Idiom

Version 0.6.4

rnmamod

Bayesian Network Meta-Analysis with Missing Participants

Version 0.4.0

targeted

Targeted Inference

Version 0.5

RNAseqNet

Log-Linear Poisson Graphical Model with Hot-Deck Multiple Imputation

Version 0.1.5

TAM

Test Analysis Modules

Version 4.2-21

wrProteo

Proteomics Data Analysis Functions

Version 1.12.0

rtop

Interpolation of Data with Variable Spatial Support

Version 0.6-9

robustrank

Robust Rank-Based Tests

Version 2024.1-28

SOMbrero

SOM Bound to Realize Euclidean and Relational Outputs

Version 1.4-2

Rphylopars

Phylogenetic Comparative Tools for Missing Data and Within-Species Var...

Version 0.3.10

timeSeries

Financial Time Series Objects (Rmetrics)

Version 4041.111

yaImpute

Nearest Neighbor Observation Imputation and Evaluation Tools

Version 1.0-34.1

spacetime

Classes and Methods for Spatio-Temporal Data

Version 1.3-2

Qtools

Utilities for Quantiles

Version 1.5.9

RMixtCompIO

Minimal Interface of the C++ 'MixtComp' Library for Mixture Models wit...

Version 4.0.11

SurrogateRegression

Surrogate Outcome Regression Analysis

Version 0.6.0.1

RMixtCompUtilities

Utility Functions for 'MixtComp' Outputs

Version 4.1.6

rsem

Robust Structural Equation Modeling with Missing Data and Auxiliary Va...

Version 0.5.1

QTLRel

Tools for Mapping of Quantitative Traits of Genetically Related Indivi...

Version 1.14

RMixtComp

Mixture Models with Heterogeneous and (Partially) Missing Data

Version 4.1.4

zoo

S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered O...

Version 1.8-12

Rforestry

Random Forests, Linear Trees, and Gradient Boosting for Inference and ...

Version 0.10.0

SNPfiltR

Interactively Filter SNP Datasets

Version 1.0.1

toweranNA

A Method for Handling Missing Values in Prediction Applications

Version 0.1.0

RfEmpImp

Multiple Imputation using Chained Random Forests

Version 2.1.8

stfit

Spatio-Temporal Functional Imputation Tool

Version 0.99.9

VIM

Visualization and Imputation of Missing Values

Version 6.2.2

RcppCensSpatial

Spatial Estimation and Prediction for Censored/Missing Responses

Version 0.3.0

simputation

Simple Imputation

Version 0.2.8

semTools

Useful Tools for Structural Equation Modeling

Version 0.5-6

sjlabelled

Labelled Data Utility Functions

Version 1.2.0

tsrobprep

Robust Preprocessing of Time Series Data

Version 0.3.2

simglm

Simulate Models Based on the Generalized Linear Model

Version 0.8.9

retroharmonize

Ex Post Survey Data Harmonization

Version 0.2.0

TestDataImputation

Missing Item Responses Imputation for Test and Assessment Data

Version 2.3

simFrame

Simulation Framework

Version 0.5.4

qpNCA

Noncompartmental Pharmacokinetic Analysis by qPharmetra

Version 1.1.6

ROptSpace

Matrix Reconstruction from a Few Entries

Version 0.2.3

StAMPP

Statistical Analysis of Mixed Ploidy Populations

Version 1.6.3

softImpute

Matrix Completion via Iterative Soft-Thresholded SVD

Version 1.4-1

prophet

Automatic Forecasting Procedure

Version 1.0

RCAL

Regularized Calibrated Estimation

Version 2.0

StempCens

Spatio-Temporal Estimation and Prediction for Censored/Missing Respons...

Version 1.1.0

VarSelLCM

Variable Selection for Model-Based Clustering of Mixed-Type Data Set w...

Version 2.1.3.1

sanon

Stratified Analysis with Nonparametric Covariable Adjustment

Version 1.6

SynthTools

Tools and Tests for Experiments with Partially Synthetic Data Sets

Version 1.0.1

RBtest

Regression-Based Approach for Testing the Type of Missing Data

Version 1.1

robustrao

An Extended Rao-Stirling Diversity Index to Handle Missing Data

Version 1.0-5

SAVER

Single-Cell RNA-Seq Gene Expression Recovery

Version 1.1.2

ui

Uncertainty Intervals and Sensitivity Analysis for Missing Data

Version 0.1.1

scorecardModelUtils

Credit Scorecard Modelling Utils

Version 0.0.1.0

TreeSim

Simulating Phylogenetic Trees

Version 2.4

swgee

Simulation Extrapolation Inverse Probability Weighted Generalized Esti...

Version 1.4

tensorBF

Bayesian Tensor Factorization

Version 1.0.2

StratifiedRF

Builds Trees by Sampling Variables in Groups

Version 0.2.2

stlplus

Enhanced Seasonal Decomposition of Time Series by Loess

Version 0.5.1

cobalt

Covariate Balance Tables and Plots

Version 4.5.5

ggmice

Visualizations for 'mice' with 'ggplot2'

Version 0.1.0

InformativeCensoring

Multiple Imputation for Informative Censoring

Version 0.3.6

brokenstick

Broken Stick Model for Irregular Longitudinal Data

Version 2.5.0

didimputation

Imputation Estimator from Borusyak, Jaravel, and Spiess (2021)

Version 0.3.0

fauxnaif

Convert Values to NA

Version 0.7.1

geneticae

Statistical Tools for the Analysis of Multi Environment Agronomic Tria...

Version 0.4.0

areal

Areal Weighted Interpolation

Version 0.1.8

edmcr

Euclidean Distance Matrix Completion Tools

Version 0.2.0

tsibble

Tidy Temporal Data Frames and Tools

Version 1.1.5

imputeFin

Imputation of Financial Time Series with Missing Values and/or Outlier...

Version 0.1.2

BMTAR

Bayesian Approach for MTAR Models with Missing Data

Version 0.1.1

R6causal

R6 Class for Structural Causal Models

Version 0.8.3

naniar

Data Structures, Summaries, and Visualisations for Missing Data

Version 1.1.0

randomForest

Breiman and Cutlers Random Forests for Classification and Regression

Version 4.7-1.2

tidyr

Tidy Messy Data

Version 1.3.1

QUALYPSO

Partitioning Uncertainty Components of an Incomplete Ensemble of Clima...

Version 2.3

rMIDAS

Multiple Imputation with Denoising Autoencoders

Version 1.0.0

robCompositions

Compositional Data Analysis

Version 2.4.1

roperators

Additional Operators to Help you Write Cleaner R Code

Version 1.3.14

lqr

Robust Linear Quantile Regression

Version 5.2

psfmi

Prediction Model Pooling, Selection and Performance Evaluation Across ...

Version 1.4.0

mice

Multivariate Imputation by Chained Equations

Version 3.16.0

plsRbeta

Partial Least Squares Regression for Beta Regression Models

Version 0.3.0

padr

Quickly Get Datetime Data Ready for Analysis

Version 0.6.2

miceFast

Fast Imputations Using 'Rcpp' and 'Armadillo'

Version 0.8.2

miceafter

Data and Statistical Analyses after Multiple Imputation

Version 0.5.0

NIMAA

Nominal Data Mining Analysis

Version 0.2.1

paths

An Imputation Approach to Estimating Path-Specific Causal Effects

Version 0.1.1

metagear

Comprehensive Research Synthesis Tools for Systematic Reviews and Meta...

Version 0.7

nawtilus

Navigated Weighting for the Inverse Probability Weighting

Version 0.1.4

MatchThem

Matching and Weighting Multiply Imputed Datasets

Version 1.2.1

exdex

Estimation of the Extremal Index

Version 1.2.3

mvnmle

ML Estimation for Multivariate Normal Data with Missing Values

Version 0.1-11.2

miclust

Multiple Imputation in Cluster Analysis

Version 1.2.8

CMF

Collective Matrix Factorization

Version 1.0.3

monomvn

Estimation for MVN and Student-t Data with Monotone Missingness

Version 1.9-21

forecast

Forecasting Functions for Time Series and Linear Models

Version 8.23.0

zCompositions

Treatment of Zeros, Left-Censored and Missing Values in Compositional ...

Version 1.5.0-4

TRMF

Temporally Regularized Matrix Factorization

Version 0.2.1

lavaan

Latent Variable Analysis

Version 0.6-19

xts

eXtensible Time Series

Version 0.14.1

smcfcs

Multiple Imputation of Covariates by Substantive Model Compatible Full...

Version 1.8.0

DescTools

Tools for Descriptive Statistics

Version 0.99.57

COINr

Composite Indicator Construction and Analysis

Version 1.1.14

sievePH

Sieve Analysis Methods for Proportional Hazards Models

Version 1.1

mix

Estimation/Multiple Imputation for Mixed Categorical and Continuous Da...

Version 1.0-12

StatMatch

Statistical Matching or Data Fusion

Version 1.4.2

sjmisc

Data and Variable Transformation Functions

Version 2.8.10

CoImp

Parametric and Non-Parametric Copula-Based Imputation Methods

Version 2.0.1

rsparse

Statistical Learning on Sparse Matrices

Version 0.5.2

mi4p

Multiple Imputation for Proteomics

Version 1.2

FamEvent

Family Age-at-Onset Data Simulation and Penetrance Estimation

Version 3.2

LUCIDus

LUCID with Multiple Omics Data

Version 3.0.3

dejaVu

Multiple Imputation for Recurrent Events

Version 0.3.1

mirt

Multidimensional Item Response Theory

Version 1.42

mdmb

Model Based Treatment of Missing Data

Version 1.9-22

dosearch

Causal Effect Identification from Multiple Incomplete Data Sources

Version 1.0.11

eimpute

Efficiently Impute Large Scale Incomplete Matrix

Version 0.2.4

MixtureMissing

Robust and Flexible Model-Based Clustering for Data Sets with Missing ...

Version 3.0.3

BayesMallows

Bayesian Preference Learning with the Mallows Rank Model

Version 2.2.2

missRanger

Fast Imputation of Missing Values

Version 2.6.0

rrcovNA

Scalable Robust Estimators with High Breakdown Point for Incomplete Da...

Version 0.5-2

Haplin

Analyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotyp...

Version 7.3.2

iai

Interface to 'Interpretable AI' Modules

Version 1.10.2

OpenMx

Extended Structural Equation Modelling

Version 2.21.13

lfl

Linguistic Fuzzy Logic

Version 2.2.1

memisc

Management of Survey Data and Presentation of Analysis Results

Version 0.99.31.8.1

misty

Miscellaneous Functions 'T. Yanagida'

Version 0.6.8

Hmisc

Harrell Miscellaneous

Version 5.2-0

SNPassoc

SNPs-Based Whole Genome Association Studies

Version 2.1-2

metansue

Meta-Analysis of Studies with Non-Statistically Significant Unreported...

Version 2.6

hhsmm

Hidden Hybrid Markov/Semi-Markov Model Fitting

Version 0.4.2

declared

Functions for Declared Missing Values

Version 0.25