Survival Analysis - CRAN Task View

addhazard

Fit Additive Hazards Models for Survival Analysis

Version 1.1.0

APtools

Average Positive Predictive Values (AP) for Binary Outcomes and Censor...

Version 6.8.8

asaur

Data Sets for "Applied Survival Analysis Using R""

Version 0.50

asbio

A Collection of Statistical Tools for Biologists

Version 1.9-7

aster

Aster Models

Version 1.1-3

cmprskQR

Analysis of Competing Risks Using Quantile Regressions

Version 0.9.2

boot

Bootstrap Functions (Originally by Angelo Canty for S)

Version 1.3-31

bnnSurvival

Bagged k-Nearest Neighbors Survival Prediction

Version 0.1.5

boot.pval

Bootstrap p-Values

Version 0.5

bpcp

Beta Product Confidence Procedure for Right Censored Data

Version 1.4.2

bujar

Buckley-James Regression for Survival Data with High-Dimensional Covar...

Version 0.2-11

CFC

Cause-Specific Framework for Competing-Risk Analysis

Version 1.2.0

clinfun

Clinical Trial Design and Data Analysis Functions

Version 1.1.5

DTDA

Doubly Truncated Data Analysis

Version 3.0.1

coarseDataTools

Analysis of Coarsely Observed Data

Version 0.6-6

coin

Conditional Inference Procedures in a Permutation Test Framework

Version 1.4-3

compareC

Compare Two Correlated C Indices with Right-Censored Survival Outcome

Version 1.3.2

emplik

Empirical Likelihood Ratio for Censored/Truncated Data

Version 1.3-2

condGEE

Parameter Estimation in Conditional GEE for Recurrent Event Gap Times

Version 0.2.0

condSURV

Estimation of the Conditional Survival Function for Ordered Multivaria...

Version 2.0.4

controlTest

Quantile Comparison for Two-Sample Right-Censored Survival Data

Version 1.1.0

csci

Current Status Confidence Intervals

Version 0.9.3

coxphf

Cox Regression with Firth's Penalized Likelihood

Version 1.13.4

coxphw

Weighted Estimation in Cox Regression

Version 4.0.3

coxrobust

Fit Robustly Proportional Hazards Regression Model

Version 1.0.1

coxsei

Fitting a CoxSEI Model

Version 0.3

crrSC

Competing Risks Regression for Stratified and Clustered Data

Version 1.1.2

currentSurvival

Estimation of CCI and CLFS Functions

Version 1.1

dblcens

Compute the NPMLE of Distribution Function from Doubly Censored Data, ...

Version 1.1.9

discSurv

Discrete Time Survival Analysis

Version 2.0.0

dynpred

Companion Package to "Dynamic Prediction in Clinical Survival Analysis...

Version 0.1.2

multcomp

Simultaneous Inference in General Parametric Models

Version 1.4-26

ELYP

Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (200...

Version 0.7-5

etm

Empirical Transition Matrix

Version 1.1.1

exactRankTests

Exact Distributions for Rank and Permutation Tests

Version 0.8-35

fastcox

Lasso and Elastic-Net Penalized Cox's Regression in High Dimensions Mo...

Version 1.1.3

FHtest

Tests for Right and Interval-Censored Survival Data Based on the Flemi...

Version 1.5.1

flexrsurv

Flexible Relative Survival Analysis

Version 2.0.18

frailtyEM

Fitting Frailty Models with the EM Algorithm

Version 1.0.1

frailtyHL

Frailty Models via Hierarchical Likelihood

Version 2.3

frailtySurv

General Semiparametric Shared Frailty Model

Version 1.3.8

gamboostMSM

Boosting Multistate Models

Version 1.1.88

gamlss.cens

Fitting an Interval Response Variable Using `gamlss.family' Distributi...

Version 5.0-7

gcerisk

Generalized Competing Event Model

Version 19.05.24

gems

Generalized Multistate Simulation Model

Version 1.1.1

LTRCtrees

Survival Trees to Fit Left-Truncated and Right-Censored and Interval-C...

Version 1.1.1

glmpath

L1 Regularization Path for Generalized Linear Models and Cox Proportio...

Version 0.98

GORCure

Fit Generalized Odds Rate Mixture Cure Model with Interval Censored Da...

Version 2.0

GSSE

Genotype-Specific Survival Estimation

Version 0.1

gss

General Smoothing Splines

Version 2.2-8

gte

Generalized Turnbull's Estimator

Version 1.2-3

icenReg

Regression Models for Interval Censored Data

Version 2.0.16

ICGOR

Fit Generalized Odds Rate Hazards Model with Interval Censored Data

Version 2.0

icRSF

A Modified Random Survival Forest Algorithm

Version 1.2

ICsurv

Semiparametric Regression Analysis of Interval-Censored Data

Version 1.0.1

IDPSurvival

Imprecise Dirichlet Process for Survival Analysis

Version 1.2

intccr

Semiparametric Competing Risks Regression under Interval Censoring

Version 3.0.4

interval

Weighted Logrank Tests and NPMLE for Interval Censored Data

Version 1.1-1.0

intsurv

Integrative Survival Modeling

Version 0.2.2

invGauss

Threshold Regression that Fits the (Randomized Drift) Inverse Gaussian...

Version 1.2

JM

Joint Modeling of Longitudinal and Survival Data

Version 1.5-2

JMbayes

Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian...

Version 0.8-85

joint.Cox

Joint Frailty-Copula Models for Tumour Progression and Death in Meta-A...

Version 3.16

km.ci

Confidence Intervals for the Kaplan-Meier Estimator

Version 0.5-6

kmc

Kaplan-Meier Estimator with Constraints for Right Censored Data -- a R...

Version 0.4-2

kmi

Kaplan-Meier Multiple Imputation for the Analysis of Cumulative Incide...

Version 0.5.5

KMsurv

Data sets from Klein and Moeschberger (1997), Survival Analysis

Version 0.1-5

KONPsurv

KONP Tests: Powerful K-Sample Tests for Right-Censored Data

Version 1.0.4

landest

Landmark Estimation of Survival and Treatment Effect

Version 1.2

LearnBayes

Functions for Learning Bayesian Inference

Version 2.15.1

LexisPlotR

Plot Lexis Diagrams for Demographic Purposes

Version 0.4.0

LogicReg

Logic Regression

Version 1.6.6

logspline

Routines for Logspline Density Estimation

Version 2.1.22

lpc

Lassoed Principal Components for Testing Significance of Features

Version 1.0.2.1

lsmeans

Least-Squares Means

Version 2.30-0

maxcombo

The Group Sequential Max-Combo Test for Comparing Survival Curves

Version 1.0

maxstat

Maximally Selected Rank Statistics

Version 0.7-25

mexhaz

Mixed Effect Excess Hazard Models

Version 2.6

miCoPTCM

Promotion Time Cure Model with Mis-Measured Covariates

Version 1.1

MicSim

Performing Continuous-Time Microsimulation

Version 2.0.1

mixPHM

Mixtures of Proportional Hazard Models

Version 0.7-2

MLEcens

Computation of the MLE for Bivariate Interval Censored Data

Version 0.1-7.1

mmcif

Mixed Multivariate Cumulative Incidence Functions

Version 0.1.1

RobustAFT

Truncated Maximum Likelihood Fit and Robust Accelerated Failure Time R...

Version 1.4-7

MST

Multivariate Survival Trees

Version 2.2

muhaz

Hazard Function Estimation in Survival Analysis

Version 1.2.6.4

multipleNCC

Weighted Cox-Regression for Nested Case-Control Data

Version 1.2-4

MultSurvTests

Permutation Tests for Multivariate Survival Analysis

Version 0.2

NADA

Nondetects and Data Analysis for Environmental Data

Version 1.6-1.1

NPHMC

Sample Size Calculation for the Proportional Hazards Mixture Cure Mode...

Version 2.3

NPMLEcmprsk

Type-Specific Failure Rate and Hazard Rate on Competing Risks Data

Version 3.0

npsurv

Nonparametric Survival Analysis

Version 0.5-0

OrdFacReg

Least Squares, Logistic, and Cox-Regression with Ordered Predictors

Version 1.0.6

pch

Piecewise Constant Hazard Models for Censored and Truncated Data

Version 2.1

pec

Prediction Error Curves for Risk Prediction Models in Survival Analysi...

Version 2023.04.12

mixAK

Multivariate Normal Mixture Models and Mixtures of Generalized Linear ...

Version 5.8

penalized

L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs...

Version 0.9-52

penMSM

Estimating Regularized Multi-state Models Using L1 Penalties

Version 0.99

PenCoxFrail

Regularization in Cox Frailty Models

Version 2.0.0

PermAlgo

Permutational Algorithm to Simulate Survival Data

Version 1.2

polspline

Polynomial Spline Routines

Version 1.1.25

powerSurvEpi

Power and Sample Size Calculation for Survival Analysis of Epidemiolog...

Version 0.1.3

PReMiuM

Dirichlet Process Bayesian Clustering, Profile Regression

Version 3.2.13

prodlim

Product-Limit Estimation for Censored Event History Analysis

Version 2024.06.25

spatstat

Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests

Version 3.3-0

survey

Analysis of Complex Survey Samples

Version 4.4-2

spBayesSurv

Bayesian Modeling and Analysis of Spatially Correlated Survival Data

Version 1.1.8

SMPracticals

Practicals for Use with Davison (2003) Statistical Models

Version 1.4-3.1

uniah

Unimodal Additive Hazards Model

Version 1.2

rstanarm

Bayesian Applied Regression Modeling via Stan

Version 2.32.1

psbcGroup

Penalized Parametric and Semiparametric Bayesian Survival Models with ...

Version 1.7

SurvLong

Analysis of Proportional Hazards Model with Sparse Longitudinal Covari...

Version 1.4

tdROC

Nonparametric Estimation of Time-Dependent ROC, Brier Score, and Survi...

Version 2.0

aster2

Aster Models

Version 0.3-2

rpart

Recursive Partitioning and Regression Trees

Version 4.1.23

ranger

A Fast Implementation of Random Forests

Version 0.17.0

SurvRegCensCov

Weibull Regression for a Right-Censored Endpoint with Interval-Censore...

Version 1.7

TP.idm

Estimation of Transition Probabilities for the Illness-Death Model

Version 1.5.1

VGAM

Vector Generalized Linear and Additive Models

Version 1.1-12

survSNP

Power Calculations for SNP Studies with Censored Outcomes

Version 0.26

relsurv

Relative Survival

Version 2.2-9

survivalROC

Time-Dependent ROC Curve Estimation from Censored Survival Data

Version 1.0.3.1

survivalMPL

Penalised Maximum Likelihood for Survival Analysis Models

Version 0.2-3

SurvCorr

Correlation of Bivariate Survival Times

Version 1.1

SimSurvNMarker

Simulate Survival Time and Markers

Version 0.1.3

tpr

Temporal Process Regression

Version 0.3-3

reda

Recurrent Event Data Analysis

Version 0.5.4

saws

Small-Sample Adjustments for Wald Tests Using Sandwich Estimators

Version 0.9-7.0

survRM2

Comparing Restricted Mean Survival Time

Version 1.0-4

risksetROC

Riskset ROC Curve Estimation from Censored Survival Data

Version 1.0.4.1

smcure

Fit Semiparametric Mixture Cure Models

Version 2.1

simMSM

Simulation of Event Histories for Multi-State Models

Version 1.1.42

SvyNom

Nomograms for Right-Censored Outcomes from Survey Designs

Version 1.2

survIDINRI

IDI and NRI for Comparing Competing Risk Prediction Models with Censor...

Version 1.1-2

survexp.fr

Relative Survival, AER and SMR Based on French Death Rates

Version 1.1

survMisc

Miscellaneous Functions for Survival Data

Version 0.5.6

TransModel

Fit Linear Transformation Models for Right Censored Data

Version 2.3

survsim

Simulation of Simple and Complex Survival Data

Version 1.1.8

survPresmooth

Presmoothed Estimation in Survival Analysis

Version 1.1-11

vsd

Graphical Shim for Visual Survival Data Analysis

Version 0.1.0

survC1

C-Statistics for Risk Prediction Models with Censored Survival Data

Version 1.0-3

SemiCompRisks

Hierarchical Models for Parametric and Semi-Parametric Analyses of Sem...

Version 3.4

simsurv

Simulate Survival Data

Version 1.0.0

simPH

Simulate and Plot Estimates from Cox Proportional Hazards Models

Version 1.3.13

superpc

Supervised Principal Components

Version 1.12

YPmodel

The Short-Term and Long-Term Hazard Ratio Model for Survival Data

Version 1.4

spef

Semiparametric Estimating Functions

Version 1.0.9

timeROC

Time-Dependent ROC Curve and AUC for Censored Survival Data

Version 0.4

SGL

Fit a GLM (or Cox Model) with a Combination of Lasso and Group Lasso R...

Version 1.3

SemiMarkov

Multi-States Semi-Markov Models

Version 1.4.6

TSHRC

Two Stage Hazard Rate Comparison

Version 0.1-6

simexaft

simexaft

Version 1.0.7.1

rhosp

Side Effect Risks in Hospital : Simulation and Estimation

Version 1.10

vitality

Fitting Routines for the Vitality Family of Mortality Models

Version 1.3

thregI

Threshold Regression for Interval-Censored Data with a Cure Rate Optio...

Version 1.0.4

pseudo

Computes Pseudo-Observations for Modeling

Version 1.4.3

surv2sampleComp

Inference for Model-Free Between-Group Parameters for Censored Surviva...

Version 1.0-5

SSRMST

Sample Size Calculation using Restricted Mean Survival Time

Version 0.1.1

rankhazard

Rank-Hazard Plots

Version 1.1.0

SimHaz

Simulated Survival and Hazard Analysis for Time-Dependent Exposure

Version 0.1

genSurv

Generating Multi-State Survival Data

Version 1.0.4

glmnet

Lasso and Elastic-Net Regularized Generalized Linear Models

Version 4.1-8

InformativeCensoring

Multiple Imputation for Informative Censoring

Version 0.3.6

joineR

Joint Modelling of Repeated Measurements and Time-to-Event Data

Version 1.2.8

eha

Event History Analysis

Version 2.11.5

smoothHR

Smooth Hazard Ratio Curves Taking a Reference Value

Version 1.0.5

Epi

Statistical Analysis in Epidemiology

Version 2.58

mets

Analysis of Multivariate Event Times

Version 1.3.4

TPmsm

Estimation of Transition Probabilities in Multistate Models

Version 1.2.12

survex

Explainable Machine Learning in Survival Analysis

Version 1.2.0

plac

A Pairwise Likelihood Augmented Cox Estimator for Left-Truncated Data

Version 0.1.3

peperr

Parallelised Estimation of Prediction Error

Version 1.5

plsRcox

Partial Least Squares Regression for Cox Models and Related Techniques

Version 1.7.7

mvna

Nelson-Aalen Estimator of the Cumulative Hazard in Multistate Models

Version 2.0.1

riskRegression

Risk Regression Models and Prediction Scores for Survival Analysis wit...

Version 2023.12.21

joineRML

Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Ou...

Version 0.4.6

Cyclops

Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis

Version 3.5.0

survival

Survival Analysis

Version 3.8-3

DAAG

Data Analysis and Graphics Data and Functions

Version 1.25.6

censReg

Censored Regression (Tobit) Models

Version 0.5-38

cmprsk

Subdistribution Analysis of Competing Risks

Version 2.2-12

bshazard

Nonparametric Smoothing of the Hazard Function

Version 1.2

randomForestSRC

Fast Unified Random Forests for Survival, Regression, and Classificati...

Version 3.3.1

MCMCglmm

MCMC Generalised Linear Mixed Models

Version 2.36

locfit

Local Regression, Likelihood and Density Estimation

Version 1.5-9.10

frailtypack

Shared, Joint (Generalized) Frailty Models; Surrogate Endpoints

Version 3.6.5

gbm

Generalized Boosted Regression Models

Version 2.2.2

pamr

Pam: Prediction Analysis for Microarrays

Version 1.57

FamEvent

Family Age-at-Onset Data Simulation and Penetrance Estimation

Version 3.2

dynsurv

Dynamic Models for Survival Data

Version 0.4-7

compound.Cox

Univariate Feature Selection and Compound Covariate for Predicting Sur...

Version 3.31

logconcens

Maximum Likelihood Estimation of a Log-Concave Density Based on Censor...

Version 0.17-4

mstate

Data Preparation, Estimation and Prediction in Multi-State Models

Version 0.3.3

fitdistrplus

Help to Fit of a Parametric Distribution to Non-Censored or Censored D...

Version 1.2-1

aftgee

Accelerated Failure Time Model with Generalized Estimating Equations

Version 1.2.1

reReg

Recurrent Event Regression

Version 1.4.7

ipred

Improved Predictors

Version 0.9-15

flexmsm

A General Framework for Flexible Multi-State Survival Modelling

Version 0.1.2

xgboost

Extreme Gradient Boosting

Version 1.7.8.1

flexsurv

Flexible Parametric Survival and Multi-State Models

Version 2.3.2

party

A Laboratory for Recursive Partytioning

Version 1.3-17

casebase

Fitting Flexible Smooth-in-Time Hazards and Risk Functions via Logisti...

Version 0.10.6

BMA

Bayesian Model Averaging

Version 3.18.19

coxme

Mixed Effects Cox Models

Version 2.2-22

mboost

Model-Based Boosting

Version 2.9-11

GJRM

Generalised Joint Regression Modelling

Version 0.2-6.7

rstpm2

Smooth Survival Models, Including Generalized Survival Models

Version 1.6.6.1

survminer

Drawing Survival Curves using 'ggplot2'

Version 0.5.0

MCMCpack

Markov Chain Monte Carlo (MCMC) Package

Version 1.7-1

PHeval

Evaluation of the Proportional Hazards Assumption and Test for Compari...

Version 1.1

emplik2

Empirical Likelihood Ratio Test for Two-Sample U-Statistics with Censo...

Version 1.33

ahaz

Regularization for Semiparametric Additive Hazards Regression

Version 1.15.1

AER

Applied Econometrics with R

Version 1.2-14

hdnom

Benchmarking and Visualization Toolkit for Penalized Cox Models

Version 6.0.4

timereg

Flexible Regression Models for Survival Data

Version 2.0.6

msm

Multi-State Markov and Hidden Markov Models in Continuous Time

Version 1.8.2

survAUC

Estimators of Prediction Accuracy for Time-to-Event Data

Version 1.3-0

quantreg

Quantile Regression

Version 5.99.1

TraMineR

Trajectory Miner: a Sequence Analysis Toolkit

Version 2.2-11

epiR

Tools for the Analysis of Epidemiological Data

Version 2.0.78

rms

Regression Modeling Strategies

Version 6.9-0