Mixed, Multilevel, and Hierarchical Models in R - CRAN Task View

cAIC4

Conditional Akaike Information Criterion for 'lme4' and 'nlme'

Version 1.1

aod

Analysis of Overdispersed Data

Version 1.3.3

ARpLMEC

Censored Mixed-Effects Models with Different Correlation Structures

Version 2.4.1

boot.pval

Bootstrap p-Values

Version 0.7.0

blmeco

Data Files and Functions Accompanying the Book "Bayesian Data Analysis...

Version 1.4

nimble

MCMC, Particle Filtering, and Programmable Hierarchical Modeling

Version 1.3.0

CARBayesST

Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data

Version 4.0

CLME

Constrained Inference for Linear Mixed Effects Models

Version 2.0-12

CRTgeeDR

Doubly Robust Inverse Probability Weighted Augmented GEE Estimator

Version 2.0.1

dhglm

Double Hierarchical Generalized Linear Models

Version 2.0

ggResidpanel

Panels and Interactive Versions of Diagnostic Plots using 'ggplot2'

Version 0.3.0

RTMB

'R' Bindings for 'TMB'

Version 1.7

multgee

GEE Solver for Correlated Nominal or Ordinal Multinomial Responses

Version 1.9.0

ez

Easy Analysis and Visualization of Factorial Experiments

Version 4.4-0

faux

Simulation for Factorial Designs

Version 1.2.2

SASmixed

Data sets from "SAS System for Mixed Models"

Version 1.0-4

marginaleffects

Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis Tests

Version 0.29.0

gamm4

Generalized Additive Mixed Models using 'mgcv' and 'lme4'

Version 0.2-7

geeM

Solve Generalized Estimating Equations

Version 0.10.1

geesmv

Modified Variance Estimators for Generalized Estimating Equations

Version 1.3

MASS

Support Functions and Datasets for Venables and Ripley's MASS

Version 7.3-65

ggmix

Variable Selection in Linear Mixed Models for SNP Data

Version 0.0.2

glmm

Generalized Linear Mixed Models via Monte Carlo Likelihood Approximati...

Version 1.4.5

glmmEP

Generalized Linear Mixed Model Analysis via Expectation Propagation

Version 1.0-3.1

glmmfields

Generalized Linear Mixed Models with Robust Random Fields for Spatiote...

Version 0.1.8

glmmLasso

Variable Selection for Generalized Linear Mixed Models by L1-Penalized...

Version 1.6.3

glmulti

Model Selection and Multimodel Inference Made Easy

Version 1.0.8

hglm

Hierarchical Generalized Linear Models

Version 2.2-1

influence.ME

Tools for Detecting Influential Data in Mixed Effects Models

Version 0.9-9

influence.SEM

Case Influence in Structural Equation Models

Version 2.4

pez

Phylogenetics for the Environmental Sciences

Version 1.2-5

JointAI

Joint Analysis and Imputation of Incomplete Data

Version 1.0.6

kinship2

Pedigree Functions

Version 1.9.6.1

r2glmm

Computes R Squared for Mixed (Multilevel) Models

Version 0.1.3

lmeInfo

Information Matrices for 'lmeStruct' and 'glsStruct' Objects

Version 0.3.2

LMERConvenienceFunctions

Model Selection and Post-Hoc Analysis for (G)LMER Models

Version 3.0

lmeresampler

Bootstrap Methods for Nested Linear Mixed-Effects Models

Version 0.2.4

lmerTest

Tests in Linear Mixed Effects Models

Version 3.1-3

lmeSplines

Add Smoothing Spline Modelling Capability to nlme

Version 1.1.20

lmmpar

Parallel Linear Mixed Model

Version 0.1.0

longpower

Sample Size Calculations for Longitudinal Data

Version 1.0.27

lqmm

Linear Quantile Mixed Models

Version 1.5.8

rptR

Repeatability Estimation for Gaussian and Non-Gaussian Data

Version 0.9.23

mbest

Moment-Based Estimation for Hierarchical Models

Version 0.6.1

mclogit

Multinomial Logit Models, with or without Random Effects or Overdisper...

Version 0.9.6

MCMC.qpcr

Bayesian Analysis of qRT-PCR Data

Version 1.2.4

mdhglm

Multivariate Double Hierarchical Generalized Linear Models

Version 1.8

merDeriv

Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models

Version 0.2-5

blavaan

Bayesian Latent Variable Analysis

Version 0.5-8

mixedsde

Estimation Methods for Stochastic Differential Mixed Effects Models

Version 5.0

mixlm

Mixed Model ANOVA and Statistics for Education

Version 1.4.3

mlmRev

Examples from Multilevel Modelling Software Review

Version 1.0-8

multilevelmod

Model Wrappers for Multi-Level Models

Version 1.0.0

mvctm

Multivariate Variance Components Tests for Multilevel Data

Version 1.2

mvglmmRank

Multivariate Generalized Linear Mixed Models for Ranking Sports Teams

Version 1.2-4

nlmixr2data

Nonlinear Mixed Effects Models in Population PK/PD, Data

Version 2.0.9

nlmeU

Functions and Data Supporting 'Linear Mixed-Effects Models: A Step-by-...

Version 0.71.7

nlmm

Generalized Laplace Mixed-Effects Models

Version 1.1.1

simr

Power Analysis for Generalised Linear Mixed Models by Simulation

Version 1.0.8

pan

Multiple Imputation for Multivariate Panel or Clustered Data

Version 1.9

partR2

Partitioning R2 in GLMMs

Version 0.9.2

pass.lme

Power and Sample Size for Linear Mixed Effect Models

Version 0.9.0

pedigreemm

Pedigree-Based Mixed-Effects Models

Version 0.3-5

PKNCA

Perform Pharmacokinetic Non-Compartmental Analysis

Version 0.12.1

rstanarm

Bayesian Applied Regression Modeling via Stan

Version 2.32.1

rjags

Bayesian Graphical Models using MCMC

Version 4-17

robustlmm

Robust Linear Mixed Effects Models

Version 3.3-3

rrBLUP

Ridge Regression and Other Kernels for Genomic Selection

Version 4.6.3

WeMix

Weighted Mixed-Effects Models Using Multilevel Pseudo Maximum Likeliho...

Version 4.0.3

R2BayesX

Estimate Structured Additive Regression Models with 'BayesX'

Version 1.1-6

tmbstan

MCMC Sampling from 'TMB' Model Object using 'Stan'

Version 1.0.91

QTLRel

Tools for Mapping of Quantitative Traits of Genetically Related Indivi...

Version 1.14

inlabru

Bayesian Latent Gaussian Modelling using INLA and Extensions

Version 2.13.0

vglmer

Variational Inference for Hierarchical Generalized Linear Models

Version 1.0.6

regress

Gaussian Linear Models with Linear Covariance Structure

Version 1.3-22

rockchalk

Regression Estimation and Presentation

Version 1.8.157

buildmer

Stepwise Elimination and Term Reordering for Mixed-Effects Regression

Version 2.12

sem

Structural Equation Models

Version 3.1-16

RLRsim

Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive Model...

Version 3.1-8

HLMdiag

Diagnostic Tools for Hierarchical (Multilevel) Linear Models

Version 0.5.1

MplusAutomation

An R Package for Facilitating Large-Scale Latent Variable Analyses in ...

Version 1.1.1

spind

Spatial Methods and Indices

Version 2.2.1

R2OpenBUGS

Running OpenBUGS from R

Version 3.2-4

QGglmm

Estimate Quantitative Genetics Parameters from Generalised Linear Mixe...

Version 0.8.0

VetResearchLMM

Linear Mixed Models - An Introduction with Applications in Veterinary ...

Version 1.0.0

robustBLME

Robust Bayesian Linear Mixed-Effects Models using ABC

Version 0.1.3

MarginalMediation

Marginal Mediation

Version 0.7.2

iccbeta

Multilevel Model Intraclass Correlation for Slope Heterogeneity

Version 1.2.0

cplm

Compound Poisson Linear Models

Version 0.7-12.1

merTools

Tools for Analyzing Mixed Effect Regression Models

Version 0.6.2

gllvm

Generalized Linear Latent Variable Models

Version 2.0.5

glmmrBase

Generalised Linear Mixed Models in R

Version 1.0.2

powerEQTL

Power and Sample Size Calculation for Bulk Tissue and Single-Cell eQTL...

Version 0.3.6

varTestnlme

Variance Components Testing for Linear and Nonlinear Mixed Effects Mod...

Version 1.3.5

rr2

R2s for Regression Models

Version 1.1.1

skewlmm

Scale Mixture of Skew-Normal Linear Mixed Models

Version 1.1.2

mlmtools

Multi-Level Model Assessment Kit

Version 1.0.2

nlme

Linear and Nonlinear Mixed Effects Models

Version 3.1-168

splmm

Simultaneous Penalized Linear Mixed Effects Models

Version 1.2.0

brms

Bayesian Regression Models using 'Stan'

Version 2.22.0

phyr

Model Based Phylogenetic Analysis

Version 1.1.0

galamm

Generalized Additive Latent and Mixed Models

Version 0.2.3

mgcv

Mixed GAM Computation Vehicle with Automatic Smoothness Estimation

Version 1.9-3

piecewiseSEM

Piecewise Structural Equation Modeling

Version 2.3.0.1

lavaan

Latent Variable Analysis

Version 0.6-19

geepack

Generalized Estimating Equation Package

Version 1.3.12

parameters

Processing of Model Parameters

Version 0.28.1

gee

Generalized Estimation Equation Solver

Version 4.13-29

StroupGLMM

R Codes and Datasets for Generalized Linear Mixed Models: Modern Conce...

Version 0.3.0

mlmhelpr

Multilevel/Mixed Model Helper Functions

Version 0.1.1

rstan

R Interface to Stan

Version 2.32.7

TMB

Template Model Builder: A General Random Effect Tool Inspired by 'ADMB...

Version 1.9.17

MCMCglmm

MCMC Generalised Linear Mixed Models

Version 2.36

car

Companion to Applied Regression

Version 3.1-3

dotwhisker

Dot-and-Whisker Plots of Regression Results

Version 0.8.4

mice

Multivariate Imputation by Chained Equations

Version 3.18.0

pbkrtest

Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods fo...

Version 0.5.5

repeated

Non-Normal Repeated Measurements Models

Version 1.1.10

greta

Simple and Scalable Statistical Modelling in R

Version 0.5.0

ordbetareg

Ordered Beta Regression Models with 'brms'

Version 0.8

qrNLMM

Quantile Regression for Nonlinear Mixed-Effects Models

Version 4.0

qrLMM

Quantile Regression for Linear Mixed-Effects Models

Version 2.3

BGLR

Bayesian Generalized Linear Regression

Version 1.1.4

mdmb

Model Based Treatment of Missing Data

Version 1.9-22

CpGassoc

Association Between Methylation and a Phenotype of Interest

Version 2.70

babelmixr2

Use 'nlmixr2' to Interact with Open Source and Commercial Software

Version 0.1.9

bamlss

Bayesian Additive Models for Location, Scale, and Shape (and Beyond)

Version 1.2-5

glmtoolbox

Set of Tools to Data Analysis using Generalized Linear Models

Version 0.1.12

mrgsolve

Simulate from ODE-Based Models

Version 1.6.1

R2jags

Using R to Run 'JAGS'

Version 0.8-9

broom.mixed

Tidying Methods for Mixed Models

Version 0.2.9.6

margins

Marginal Effects for Model Objects

Version 0.3.28

ordinal

Regression Models for Ordinal Data

Version 2023.12-4.1

DHARMa

Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression...

Version 0.4.7

PKPDsim

Tools for Performing Pharmacokinetic-Pharmacodynamic Simulations

Version 1.4.1

boxcoxmix

Box-Cox-Type Transformations for Linear and Logistic Models with Rando...

Version 0.46

coxme

Mixed Effects Cox Models

Version 2.2-22

languageR

Data Sets and Functions with Analyzing Linguistic Data: A Practical In...

Version 1.6

mmrm

Mixed Models for Repeated Measures

Version 0.3.15

ggeffects

Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Ou...

Version 2.3.1

afex

Analysis of Factorial Experiments

Version 1.5-0

modelsummary

Summary Tables and Plots for Statistical Models and Data: Beautiful, C...

Version 2.5.0

glmertree

Generalized Linear Mixed Model Trees

Version 0.2-6

aods3

Analysis of Overdispersed Data using S3 Methods

Version 0.5

spmodel

Spatial Statistical Modeling and Prediction

Version 0.11.0

blme

Bayesian Linear Mixed-Effects Models

Version 1.0-6

sjPlot

Data Visualization for Statistics in Social Science

Version 2.9.0

GLMMadaptive

Generalized Linear Mixed Models using Adaptive Gaussian Quadrature

Version 0.9-7

confintROB

Confidence Intervals for Robust and Classical Linear Mixed Model Estim...

Version 1.0-2

sphet

Estimation of Spatial Autoregressive Models with and without Heteroske...

Version 2.1-1

lme4

Linear Mixed-Effects Models using 'Eigen' and S4

Version 1.1-37

glmmsel

Generalised Linear Mixed Model Selection

Version 1.0.3

clubSandwich

Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Correc...

Version 0.6.1

MuMIn

Multi-Model Inference

Version 1.48.11

glmmTMB

Generalized Linear Mixed Models using Template Model Builder

Version 1.1.12

plm

Linear Models for Panel Data

Version 2.6-6

spaMM

Mixed-Effect Models, with or without Spatial Random Effects

Version 4.6.1

bcmixed

Mixed Effect Model with the Box-Cox Transformation

Version 0.1.5

multilevelTools

Multilevel and Mixed Effects Model Diagnostics and Effect Sizes

Version 0.2.0

insight

Easy Access to Model Information for Various Model Objects

Version 1.4.1

performance

Assessment of Regression Models Performance

Version 0.15.1

RVAideMemoire

Testing and Plotting Procedures for Biostatistics

Version 0.9-83-12

asremlPlus

Augments 'ASReml-R' in Fitting Mixed Models and Packages Generally in ...

Version 4.4.51

effects

Effect Displays for Linear, Generalized Linear, and Other Models

Version 4.2-4

emmeans

Estimated Marginal Means, aka Least-Squares Means

Version 1.11.2-8

gamlss

Generalized Additive Models for Location Scale and Shape

Version 5.5-0

huxtable

Easily Create and Style Tables for LaTeX, HTML and Other Formats

Version 5.7.0

micemd

Multiple Imputation by Chained Equations with Multilevel Data

Version 1.10.1

nlmixr2

Nonlinear Mixed Effects Models in Population PK/PD

Version 4.0.1

rxode2

Facilities for Simulating from ODE-Based Models

Version 4.1.0

saemix

Stochastic Approximation Expectation Maximization (SAEM) Algorithm

Version 3.4

semtree

Recursive Partitioning for Structural Equation Models

Version 0.9.22

sommer

Solving Mixed Model Equations in R

Version 4.4.3

zoib

Bayesian Inference for Beta Regression and Zero-or-One Inflated Beta R...

Version 1.6.1