Mixed, Multilevel, and Hierarchical Models in R - CRAN Task View

cAIC4

Conditional Akaike Information Criterion for 'lme4' and 'nlme'

Version 1.0

aod

Analysis of Overdispersed Data

Version 1.3.3

ARpLMEC

Censored Mixed-Effects Models with Different Correlation Structures

Version 2.4.1

bamlss

Bayesian Additive Models for Location, Scale, and Shape (and Beyond)

Version 1.2-4

BGLR

Bayesian Generalized Linear Regression

Version 1.1.2

blmeco

Data Files and Functions Accompanying the Book "Bayesian Data Analysis...

Version 1.4

boot.pval

Bootstrap p-Values

Version 0.5

broom.mixed

Tidying Methods for Mixed Models

Version 0.2.9.5

buildmer

Stepwise Elimination and Term Reordering for Mixed-Effects Regression

Version 2.11

CARBayesST

Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data

Version 4.0

CLME

Constrained Inference for Linear Mixed Effects Models

Version 2.0-12

CRTgeeDR

Doubly Robust Inverse Probability Weighted Augmented GEE Estimator

Version 2.0.1

DHARMa

Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression...

Version 0.4.6

dhglm

Double Hierarchical Generalized Linear Models

Version 2.0

ggResidpanel

Panels and Interactive Versions of Diagnostic Plots using 'ggplot2'

Version 0.3.0

RTMB

'R' Bindings for 'TMB'

Version 1.6

effects

Effect Displays for Linear, Generalized Linear, and Other Models

Version 4.2-2

multgee

GEE Solver for Correlated Nominal or Ordinal Multinomial Responses

Version 1.9.0

ez

Easy Analysis and Visualization of Factorial Experiments

Version 4.4-0

faux

Simulation for Factorial Designs

Version 1.2.1

SASmixed

Data sets from "SAS System for Mixed Models"

Version 1.0-4

gamlss

Generalized Additive Models for Location Scale and Shape

Version 5.4-22

gamm4

Generalized Additive Mixed Models using 'mgcv' and 'lme4'

Version 0.2-6

geeM

Solve Generalized Estimating Equations

Version 0.10.1

geesmv

Modified Variance Estimators for Generalized Estimating Equations

Version 1.3

MASS

Support Functions and Datasets for Venables and Ripley's MASS

Version 7.3-61

glmm

Generalized Linear Mixed Models via Monte Carlo Likelihood Approximati...

Version 1.4.5

GLMMadaptive

Generalized Linear Mixed Models using Adaptive Gaussian Quadrature

Version 0.9-1

glmmEP

Generalized Linear Mixed Model Analysis via Expectation Propagation

Version 1.0-3.1

glmmfields

Generalized Linear Mixed Models with Robust Random Fields for Spatiote...

Version 0.1.8

glmmLasso

Variable Selection for Generalized Linear Mixed Models by L1-Penalized...

Version 1.6.3

GLMMRR

Generalized Linear Mixed Model (GLMM) for Binary Randomized Response D...

Version 0.5.0

glmulti

Model Selection and Multimodel Inference Made Easy

Version 1.0.8

greta

Simple and Scalable Statistical Modelling in R

Version 0.4.5

hglm

Hierarchical Generalized Linear Models

Version 2.2-1

influence.ME

Tools for Detecting Influential Data in Mixed Effects Models

Version 0.9-9

influence.SEM

Case Influence in Structural Equation Models

Version 2.3

JointAI

Joint Analysis and Imputation of Incomplete Data

Version 1.0.6

kinship2

Pedigree Functions

Version 1.9.6.1

languageR

Analyzing Linguistic Data: A Practical Introduction to Statistics

Version 1.5.0

lmeInfo

Information Matrices for 'lmeStruct' and 'glsStruct' Objects

Version 0.3.2

LMERConvenienceFunctions

Model Selection and Post-Hoc Analysis for (G)LMER Models

Version 3.0

lmeresampler

Bootstrap Methods for Nested Linear Mixed-Effects Models

Version 0.2.4

lmerTest

Tests in Linear Mixed Effects Models

Version 3.1-3

lmeSplines

Add Smoothing Spline Modelling Capability to nlme

Version 1.1-12

lmmpar

Parallel Linear Mixed Model

Version 0.1.0

longpower

Sample Size Calculations for Longitudinal Data

Version 1.0.27

lqmm

Linear Quantile Mixed Models

Version 1.5.8

mbest

Moment-Based Estimation for Hierarchical Models

Version 0.6

mclogit

Multinomial Logit Models, with or without Random Effects or Overdisper...

Version 0.9.6

MCMC.qpcr

Bayesian Analysis of qRT-PCR Data

Version 1.2.4

mdhglm

Multivariate Double Hierarchical Generalized Linear Models

Version 1.8

merDeriv

Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models

Version 0.2-4

mgcv

Mixed GAM Computation Vehicle with Automatic Smoothness Estimation

Version 1.9-1

mixedsde

Estimation Methods for Stochastic Differential Mixed Effects Models

Version 5.0

mixlm

Mixed Model ANOVA and Statistics for Education

Version 1.3.0

mlmRev

Examples from Multilevel Modelling Software Review

Version 1.0-8

multilevelmod

Model Wrappers for Multi-Level Models

Version 1.0.0

multilevelTools

Multilevel and Mixed Effects Model Diagnostics and Effect Sizes

Version 0.1.1

mvctm

Multivariate Variance Components Tests for Multilevel Data

Version 1.2

mvglmmRank

Multivariate Generalized Linear Mixed Models for Ranking Sports Teams

Version 1.2-4

nlmeU

Datasets and Utility Functions Enhancing Functionality of 'nlme' Packa...

Version 0.70-9

nlmixr2data

Nonlinear Mixed Effects Models in Population PK/PD, Data

Version 2.0.9

nlmm

Generalized Laplace Mixed-Effects Models

Version 1.1.0

simr

Power Analysis for Generalised Linear Mixed Models by Simulation

Version 1.0.7

pan

Multiple Imputation for Multivariate Panel or Clustered Data

Version 1.9

ordbetareg

Ordered Beta Regression Models with 'brms'

Version 0.7.2

partR2

Partitioning R2 in GLMMs

Version 0.9.2

pass.lme

Power and Sample Size for Linear Mixed Effect Models

Version 0.9.0

pedigreemm

Pedigree-Based Mixed-Effects Models

Version 0.3-4

pez

Phylogenetics for the Environmental Sciences

Version 1.2-4

powerEQTL

Power and Sample Size Calculation for Bulk Tissue and Single-Cell eQTL...

Version 0.3.4

semtree

Recursive Partitioning for Structural Equation Models

Version 0.9.20

sommer

Solving Mixed Model Equations in R

Version 4.3.5

rstan

R Interface to Stan

Version 2.32.6

saemix

Stochastic Approximation Expectation Maximization (SAEM) Algorithm

Version 3.3

rstanarm

Bayesian Applied Regression Modeling via Stan

Version 2.32.1

rjags

Bayesian Graphical Models using MCMC

Version 4-16

robustlmm

Robust Linear Mixed Effects Models

Version 3.3-1

rrBLUP

Ridge Regression and Other Kernels for Genomic Selection

Version 4.6.3

RVAideMemoire

Testing and Plotting Procedures for Biostatistics

Version 0.9-83-7

WeMix

Weighted Mixed-Effects Models Using Multilevel Pseudo Maximum Likeliho...

Version 4.0.3

R2BayesX

Estimate Structured Additive Regression Models with 'BayesX'

Version 1.1-5

tmbstan

MCMC Sampling from 'TMB' Model Object using 'Stan'

Version 1.0.91

QTLRel

Tools for Mapping of Quantitative Traits of Genetically Related Indivi...

Version 1.14

zoib

Bayesian Inference for Beta Regression and Zero-or-One Inflated Beta R...

Version 1.6

vglmer

Variational Inference for Hierarchical Generalized Linear Models

Version 1.0.5

rockchalk

Regression Estimation and Presentation

Version 1.8.157

sem

Structural Equation Models

Version 3.1-16

RLRsim

Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive Model...

Version 3.1-8

sphet

Estimation of Spatial Autoregressive Models with and without Heteroske...

Version 2.0

MplusAutomation

An R Package for Facilitating Large-Scale Latent Variable Analyses in ...

Version 1.1.1

spind

Spatial Methods and Indices

Version 2.2.1

regress

Gaussian Linear Models with Linear Covariance Structure

Version 1.3-21

R2OpenBUGS

Running OpenBUGS from R

Version 3.2-3.2.1

QGglmm

Estimate Quantitative Genetics Parameters from Generalised Linear Mixe...

Version 0.7.4

rptR

Repeatability Estimation for Gaussian and Non-Gaussian Data

Version 0.9.22

VetResearchLMM

Linear Mixed Models - An Introduction with Applications in Veterinary ...

Version 1.0.0

robustBLME

Robust Bayesian Linear Mixed-Effects Models using ABC

Version 0.1.3

r2glmm

Computes R Squared for Mixed (Multilevel) Models

Version 0.1.2

inlabru

Bayesian Latent Gaussian Modelling using INLA and Extensions

Version 2.11.1

MuMIn

Multi-Model Inference

Version 1.48.4

babelmixr2

Use 'nlmixr2' to Interact with Open Source and Commercial Software

Version 0.1.4

MarginalMediation

Marginal Mediation

Version 0.7.2

HLMdiag

Diagnostic Tools for Hierarchical (Multilevel) Linear Models

Version 0.5.0

iccbeta

Multilevel Model Intraclass Correlation for Slope Heterogeneity

Version 1.2.0

cplm

Compound Poisson Linear Models

Version 0.7-12.1

merTools

Tools for Analyzing Mixed Effect Regression Models

Version 0.6.2

rxode2

Facilities for Simulating from ODE-Based Models

Version 3.0.1

varTestnlme

Variance Components Testing for Linear and Nonlinear Mixed Effects Mod...

Version 1.3.5

rr2

R2s for Regression Models

Version 1.1.1

skewlmm

Scale Mixture of Skew-Normal Linear Mixed Models

Version 1.1.0

mice

Multivariate Imputation by Chained Equations

Version 3.16.0

mlmtools

Multi-Level Model Assessment Kit

Version 1.0.2

nlme

Linear and Nonlinear Mixed Effects Models

Version 3.1-166

splmm

Simultaneous Penalized Linear Mixed Effects Models

Version 1.2.0

plm

Linear Models for Panel Data

Version 2.6-4

brms

Bayesian Regression Models using 'Stan'

Version 2.22.0

phyr

Model Based Phylogenetic Analysis

Version 1.1.0

bcmixed

Mixed Effect Model with the Box-Cox Transformation

Version 0.1.4

clubSandwich

Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Correc...

Version 0.5.11

ggeffects

Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Ou...

Version 1.7.1

PKNCA

Perform Pharmacokinetic Non-Compartmental Analysis

Version 0.11.0

marginaleffects

Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis Tests

Version 0.22.0

piecewiseSEM

Piecewise Structural Equation Modeling

Version 2.3.0.1

spaMM

Mixed-Effect Models, with or without Spatial Random Effects

Version 4.5.0

lavaan

Latent Variable Analysis

Version 0.6-19

geepack

Generalized Estimating Equation Package

Version 1.3.12

nlmixr2

Nonlinear Mixed Effects Models in Population PK/PD

Version 3.0.0

gee

Generalized Estimation Equation Solver

Version 4.13-27

StroupGLMM

R Codes and Datasets for Generalized Linear Mixed Models: Modern Conce...

Version 0.3.0

mlmhelpr

Multilevel/Mixed Model Helper Functions

Version 0.1.1

sjPlot

Data Visualization for Statistics in Social Science

Version 2.8.16

glmmTMB

Generalized Linear Mixed Models using Template Model Builder

Version 1.1.10

MCMCglmm

MCMC Generalised Linear Mixed Models

Version 2.36

R2jags

Using R to Run 'JAGS'

Version 0.8-5

car

Companion to Applied Regression

Version 3.1-3

dotwhisker

Dot-and-Whisker Plots of Regression Results

Version 0.8.3

mmrm

Mixed Models for Repeated Measures

Version 0.3.14

pbkrtest

Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods fo...

Version 0.5.3

huxtable

Easily Create and Style Tables for LaTeX, HTML and Other Formats

Version 5.5.7

glmertree

Generalized Linear Mixed Model Trees

Version 0.2-5

repeated

Non-Normal Repeated Measurements Models

Version 1.1.10

TMB

Template Model Builder: A General Random Effect Tool Inspired by 'ADMB...

Version 1.9.15

emmeans

Estimated Marginal Means, aka Least-Squares Means

Version 1.10.4

lme4

Linear Mixed-Effects Models using 'Eigen' and S4

Version 1.1-35.5

qrLMM

Quantile Regression for Linear Mixed-Effects Models

Version 2.3

qrNLMM

Quantile Regression for Nonlinear Mixed-Effects Models

Version 3.4

insight

Easy Access to Model Information for Various Model Objects

Version 0.20.5

mdmb

Model Based Treatment of Missing Data

Version 1.9-22

CpGassoc

Association Between Methylation and a Phenotype of Interest

Version 2.70

glmtoolbox

Set of Tools to Data Analysis using Generalized Linear Models

Version 0.1.12

mrgsolve

Simulate from ODE-Based Models

Version 1.5.1

nimble

MCMC, Particle Filtering, and Programmable Hierarchical Modeling

Version 1.2.1

margins

Marginal Effects for Model Objects

Version 0.3.28

galamm

Generalized Additive Latent and Mixed Models

Version 0.2.1

ordinal

Regression Models for Ordinal Data

Version 2023.12-4.1

asremlPlus

Augments 'ASReml-R' in Fitting Mixed Models and Packages Generally in ...

Version 4.4.38

PKPDsim

Tools for Performing Pharmacokinetic-Pharmacodynamic Simulations

Version 1.4.0

boxcoxmix

Box-Cox-Type Transformations for Linear and Logistic Models with Rando...

Version 0.46

coxme

Mixed Effects Cox Models

Version 2.2-22

gpboost

Combining Tree-Boosting with Gaussian Process and Mixed Effects Models

Version 1.5.1.2

afex

Analysis of Factorial Experiments

Version 1.4-1

modelsummary

Summary Tables and Plots for Statistical Models and Data: Beautiful, C...

Version 2.2.0

performance

Assessment of Regression Models Performance

Version 0.12.3

parameters

Processing of Model Parameters

Version 0.22.2

blavaan

Bayesian Latent Variable Analysis

Version 0.5-6

glmmrBase

Generalised Linear Mixed Models in R

Version 0.10.5

blme

Bayesian Linear Mixed-Effects Models

Version 1.0-6