Exploratory Analyses for the Phylogenetic Comparative Method
Analysis of Diversity
Analyses of Phylogenetics and Evolution
Phylogenetic Methods for Multiple Gene Data
Analysis with Profile Hidden Markov Models
Statistical Inference and Prediction of Annotations in Phylogenetic Tr...
Interfaces to Phylogenetic Software in R
Comparative and Population Genetic Analyses
Diversity-Dependent Diversification
'BEAUti' from R
Partitioning Beta Diversity into Turnover and Nestedness Components
A Bunch of Structure and Sequence Analysis
Comparative Analyses of Phylogenetics and Evolution in R
Comparative 'Phylogenetic' Analyses of Diversification
Generalized UniFrac Distances, Distance-Based Multivariate Methods and...
Pre- And Postprocessing of Morphological Data from Relaxed Clock Bayes...
Dynamic Assembly Model of Colonization, Local Extinction and Speciatio...
Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees...
Extending 'dendrogram' Functionality in R
Measuring Disparity
Distance Between Phylogenetic Histories
Analysis of Evolutionary Diversification
Analysis and Visualization of Macroevolutionary Dynamics on Phylogenet...
Create Muller Plots of Evolutionary Dynamics
EcoPhyloMapper
Hidden State Speciation and Extinction
Interactive Dendrograms
Markov Chain Models for Phylogenetic Trees
Models of Trait Macroevolution on Trees
Calculate the NLTT Statistic
Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
Protracted Birth-Death Model of Diversification
Principal Coordinates of Phylogenetic Structure
Phylogenetic Clustering (Phyloclustering)
An Extension (for Package 'SigTree') of Some of the Classes in Package...
Interactive Phylogenetic Trees Using the 'Phylocanvas' JavaScript Libr...
Integrating Phylogenetics and Climatic Niche Modeling
Functions for Phylogenetically Based Statistical Analyses
Dendrograms for Evolutionary Analysis
Phylogenetic Linear Regression
Biogeographic Regionalization and Macroecology
Phylogenies with Annotations
Phylogenetic Tools for Eco-Phylogenetics
The Phylogenetic Regression of Grafen (1989)
Integrating Phylogenies and Ecology
Phylogenetic Monte Carlo
Several Examined and Concealed States-Dependent Speciation and Extinct...
Analysing Convergent Evolution using the Wheatsheaf Index
Phylogenetic ANalyses of DiversificAtion
Discovery, Access and Manipulation of 'TreeBASE' Phylogenies
Phylogenetic Comparative Tools for Missing Data and Within-Species Var...
Computation of Tree (Im)Balance Indices
A Tidy Tool for Phylogenetic Tree Data Manipulation
Visualization and Post-Processing of 'RevBayes' Analyses
Identify Rogue Taxa in Sets of Phylogenetic Trees
Phylogenetic Reconstruction and Analysis
Tracer from R
Semantically Rich I/O for the 'NeXML' Format
An Interface to the Nexus Class Library
Diversification Rate Estimation and Fast Simulation of Reconstructed P...
Interaction with "RevBayes" in R
Base Package for Phylogenetic Structures and Comparative Data
Rearrangement Distances Between Unrooted Phylogenetic Trees
Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
Analysis of Functional and Phylogenetic Patterns in Metacommunities
Simulating Phylogenetic Trees
Identify and Visualize Significantly Responsive Branches in a Phylogen...
Create Elegant Data Visualisations Using the Grammar of Graphics
Bayesian Regression Models using 'Stan'
Congruent Rate Analyses in Birth-Death Scenarios
Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data
Comparison of Phylogenetic Trees Using Quartet and Split Measures
Exploring the Phylogenetic Signal in Continuous Traits
Statistical Exploration of Landscapes of Phylogenetic Trees
Interface to the 'Open Tree of Life' API
Calculating Topological Properties of Phylogenies
Simulating Diversification Dynamics
Simulation and Plots for Fossil and Taxonomy Data
Meta-Analysis Package for R
Analysis of Evolutionary Rates in an OU Framework
Modelling Phylogenetic Signals using Eigenvector Maps
Phylogenetic Tools for Comparative Biology (and Other Things)
Create, Modify and Analyse Phylogenetic Trees
Analyze Paleontological Time-Series
Call 'BEAST2'
Phylogenetic Analysis with Discrete Character Data
MCMC Generalised Linear Mixed Models
Stratigraphic Tree Analysis for Palaeontology
Geometric Morphometric Analyses of 2D and 3D Landmark Data
Linear Model Evaluation with Randomized Residuals in a Permutation Pro...
Control 'BEAST2'
Efficient Phylogenetics on Large Trees
Pre- And Post-Processing in Bayesian Evolutionary Analyses
Multivariate Comparative Tools for Fitting Evolutionary Models to Morp...
Paleontological and Phylogenetic Analyses of Evolution
Phylogenetic Tree Statistics
Analysis of Convergent Evolution
Plotting Tools for Anyone Working in Deep Time
Fitting Hansen Models to Investigate Convergent Evolution
Taxonomic Information from Around the Web
Entropy Partitioning to Measure Diversity
Community Ecology Package
Measuring Morphological Diversity and Evolutionary Tempo
Calculate and Map Distances Between Phylogenetic Trees
Comparative Analysis with Annotation-Based Genomic Components